fastv report
Created by fastv v0.7.0, an ultra-fast tool for fast identification of SARS-CoV-2 and other microbes from sequencing data
Detection result for target k-mer file:POSITIVE
Mean depth of k-mer coverage:2401.556630
Threshold to be positive:0.100000
Order by: Coverage rate | Bases on target
GenomeCoverageMedian depthMean depthRemark
NC_045512.2 Wuhan seafood market pneumonia virus isolate Wuhan-Hu-1, complete genome (709 k-mer keys)99.859%21452392.42SARS-CoV-2
+ Show 1 more with low confidence (coverage < 90% or median depth < 10) ▼
sequencing:single end (5511 cycles)
mean length before filtering:629bp
mean length after filtering:596bp
duplication rate:0.096905% (may be overestimated since this is SE data)
Original data
total reads:482.954000 K
total bases:304.113442 M
Q20 bases:173.875461 M (57.174540%)
Q30 bases:73.686022 M (24.229781%)
GC content:38.674969%
Clean data used for detection
total reads:366.505000 K
total bases:218.699748 M
Q20 bases:142.294863 M (65.064027%)
Q30 bases:63.453061 M (29.013779%)
GC content:38.392094%
Filtering result
reads passed filters:366.505000 K (75.888180%)
reads with low quality:116.449000 K (24.111820%)
reads with too many N:0 (0.000000%)
reads too short:0 (0.000000%)