| Detection result for target k-mer file: | POSITIVE |
| Mean depth of k-mer coverage: | 2401.556630 |
| Threshold to be positive: | 0.100000 |
| Genome | Coverage | Median depth | Mean depth | Remark |
| NC_045512.2 Wuhan seafood market pneumonia virus isolate Wuhan-Hu-1, complete genome (709 k-mer keys) | 99.859% | 2145 | 2392.42 | SARS-CoV-2 |
| sequencing: | single end (5511 cycles) |
| mean length before filtering: | 629bp |
| mean length after filtering: | 596bp |
| duplication rate: | 0.096905% (may be overestimated since this is SE data) |
| total reads: | 482.954000 K |
| total bases: | 304.113442 M |
| Q20 bases: | 173.875461 M (57.174540%) |
| Q30 bases: | 73.686022 M (24.229781%) |
| GC content: | 38.674969% |
| total reads: | 366.505000 K |
| total bases: | 218.699748 M |
| Q20 bases: | 142.294863 M (65.064027%) |
| Q30 bases: | 63.453061 M (29.013779%) |
| GC content: | 38.392094% |
| reads passed filters: | 366.505000 K (75.888180%) |
| reads with low quality: | 116.449000 K (24.111820%) |
| reads with too many N: | 0 (0.000000%) |
| reads too short: | 0 (0.000000%) |