Helpful tips:

• Mutation point is in the center of the table.
• Base color indicates quality: extremely high (Q40+), high (Q30~Q39) , moderate (Q20~Q29), low (Q15~Q19), extremely low (0~Q14).
• Move mouse over the base, it will show the quality value.
• Click on any row, the original read/pair will be displayed.
• In first column, d means the edit distance of match, and --> means forward, <-- means reverse.
• For pair-end sequencing, MutScan tries to merge each pair, and the overlapped bases will be assigned higher qualities.