Helpful tips:

• Base color indicates quality: extremely high (Q40+), high (Q30~Q39) , moderate (Q20~Q29), low (Q15~Q19), extremely low (0~Q14).
• Move mouse over the base, it will show the quality value
• Click on any row, the original read/pair will be displayed
• For pair-end sequencing, GeneFuse tries to merge each pair, with overlapped assigned higher qualities

Columns:

• col1: is fusion mapped with original read? → means original read, ← means reverse complement
• col2: edit distance (ed) between read and reference sequence (left_part_ed | right_part_ed)
• col3: read's left part after fusion break
• col4: read's right part after fusion break

Found 2 fusions:

• 1, Fusion: EML4_ENST00000318522.5:intron:18|-chr2:42543514___ALK_ENST00000389048.3:intron:19|+chr2:29448162 (total: 816, unique:411)
• 2, Fusion: EML4_ENST00000318522.5:intron:18|+chr2:42543509___ALK_ENST00000389048.3:intron:19|-chr2:29448160 (total: 381, unique:259)