: high quality open source tools and web applications for NGS data analysis.
A search engine and annotation APIs for over 8,000,000 mutations in 100+ cancers from 200+ studies.
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting...)
Generate consensus reads to reduce sequencing noises and remove duplications.
repack Illumina format FASTQ to a smaller binary file (.rfq), which can be further compressed by xz (.rfq.xz)
Detect and visualize target gene fusions by scanning FASTQ files directly
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data.
Detect and visualize target mutations by scanning FastQ files directly.
Pattern Recognition for Cell-free DNA.
Query Mutated Reads from a Bam.
Detect and visualize microsatellite instability(MSI) from NGS data.
Ultra-fast Multi-threaded FASTQ Demultiplexing.