OpenGene: high quality open source tools and web applications for NGS data analysis.
VarCA.org
A search engine and annotation APIs for over 8,000,000 mutations in 100+ cancers from 200+ studies.
fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting...)
gencore
Generate consensus reads to reduce sequencing noises and remove duplications.
repaq
repack Illumina format FASTQ to a smaller binary file (.rfq), which can be further compressed by xz (.rfq.xz)
GeneFuse
Detect and visualize target gene fusions by scanning FASTQ files directly
AfterQC
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data.
MutScan
Detect and visualize target mutations by scanning FastQ files directly.
CfdnaPattern
Pattern Recognition for Cell-free DNA.
MrBam
Query Mutated Reads from a Bam.
VisualMSI
Detect and visualize microsatellite instability(MSI) from NGS data.
defq
Ultra-fast Multi-threaded FASTQ Demultiplexing.
Powered by HaploX and OpenGene, contact: chen@haplox.com