Query MSK-IMPACT Data
An online tool to query MSK-IMPACT data, which was published on Nature Medicine very recently. Just search by gene and mutation, then the result will show the samples having this mutation, along with this sample's clinical information.
AfterQC
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data.
MutScan
Detect and visualize target mutations by scanning FastQ files directly.
FusionScan
Gene fusion detection and visualization.
CfdnaPattern
Pattern Recognition for Cell-free DNA.
OpenGene.jl
OpenGene, core libraries for NGS data analysis and bioinformatics in julia.
SeqMaker.jl
Next Generation Sequencing Simulation with SNP, Variation and Sequencing Error Integrated.
MrBam
Query Mutated Reads from a Bam.
DeepSomatic
Classify somatic/germline mutations by deep neural networks.
FusionDirect.jl
Detect gene fusion directly from raw fastq files .